| PROJECT INFORMATION | |
|---|---|
GOLD Project ID
|
Gp0011116
|
|
Project Name
|
Buchnera aphidicola Ua
|
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Other Names
|
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Legacy ER Project ID
|
2581
|
|
Legacy GOLD ID
|
Gi09728, Gc01951
|
| NCBI BioProject Name | Buchnera aphidicola str. Ua (Uroleucon ambrosiae) |
|
NCBI BioProject ID
|
65479 |
|
NCBI BioProject Accession
|
PRJNA65479 |
|
NCBI Locus Tag
|
BUAMB
|
|
NCBI BioSample Accession
|
SAMN02604330 |
| PI | Nancy A. Moran |
| Added By |
Jakob Jansson
on 2011-06-22 |
| Last Modified By |
Alejandro Rodriguez Mojica
on 2018-07-11 |
| Project Comments |
|
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Project Status
|
Complete and Published
|
|
Project Relevance
|
|
|
Sequencing Center
|
Yale University
(USA)
|
|
Collaborating Institute
|
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Funding Agency
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Project Description
|
DNA was sequenced for the purpose of comparative genome analyses with additional Buchnera strains. DNA was isolated from an isofemale line of Uroleucon ambrosiae str. UA002 (brown ambrosia aphid). Buchnera aphidicola is a ancient, obligate, maternally transmitted, nutritional endosymbiont of aphids. Aphids and Buchnera cooperate in the biosynthesis of essential amino acids which are lacking in the aphid diet of plant phloem sap.
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
Project Information
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Database
|
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Genome Publications
|
PLoS genetics
7(9):e1002252
Sequence conservation and functional constraint on intergenic spacers in reduced genomes of the obligate symbiont Buchnera.
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Other Publications
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| PROJECT COMPOSITION | |
| Study |
Buchnera aphidicola Ua |
| Analysis Projects |
Buchnera aphidicola Ua |
| Number of Analysis Projects |
1 |
| Number of DAPs |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
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Sequencing Comments
|
|
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Sequencing Technology
(MIGS-29)
|
|
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Library Method
(MIGS-28)
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Number Of Reads
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Read Size
|
|
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Vector
|
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| GC Percent |
24
|
| Chromosome Count |
1
|
| Plasmid Count |
2
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0011116 |
| Organism Name |
Buchnera aphidicola Ua
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Buchnera
|
| Genus Synonyms |
|
| Species |
Buchnera aphidicola
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Ua
|
| Strain Synonyms |
|
| Serovar-Biovar |
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1005057 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Enterobacterales
|
| NCBI Family |
Erwiniaceae
|
| NCBI Genus |
Buchnera
|
| NCBI Species |
Buchnera aphidicola
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Insecta
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
|
| Synonym List |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
Mesophile
|
| Temperature Optimum |
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| Salinity |
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| pH |
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| Cell Diameter |
3 um
|
| Cell Length |
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| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Symbiotic |
| Symbiotic Physical Interaction |
Endosymbiotic intracellular
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| Symbiotic Relationship |
Mutualistic
|
| Symbiont Name |
Uroleucon ambrosiae
|
| Symbiont Taxon ID |
87311
|
| Cell Arrangements |
Singles |
| Diseases |
None |
| Known Habitats |
Host Insect endosymbiont Endosymbiont |
| Metabolisms |
|
| Phenotypes |
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| Energy Sources |
|
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