PROJECT NAME
GOLD Project ID
Gp0011047  
Project Name
Vibrio scophthalmi LMG 19158  
Other Names
  
Legacy ER Project ID
5662  
Legacy GOLD ID
Gi10498  
NCBI BioProject Name Vibrio scophthalmi LMG 19158
NCBI BioProject ID 51215
NCBI BioProject Accession
PRJNA51215  
NCBI Locus Tag
VIS19158  
NCBI BioSample Accession
SAMN02951901  
PI
Added By JGI automated process on 2011-08-05
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center U.S. Food and Drug Administration (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Vibrio scophthalmi LMG 19158 genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications International journal of systematic and evolutionary microbiology 62(Pt 8):1736-43 Vibrio caribbeanicus sp. nov., isolated from the marine sponge Scleritoderma cyanea.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Vibrio scophthalmi LMG 19158
Analysis Projects Vibrio scophthalmi LMG 19158
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
45  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0011047
Organism Name
Vibrio scophthalmi LMG 19158  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Vibrio  
Genus Synonyms
  
Species
Vibrio scophthalmi  
Subspecies
  
Species Synonyms
  
Strain
LMG 19158  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
LMG 19158  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3003  
Exemplar Name
Vibrio scophthalmi  
Taxon DOI
10.1601/tx.3003  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 870967
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Vibrio  
NCBI Species
Vibrio scophthalmi  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Fish  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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