PROJECT NAME
GOLD Project ID
Gp0010621  
Project Name
Acidithiobacillus caldus SM-1  
Other Names
  
Legacy ER Project ID
19138  
Legacy GOLD ID
Gi09128, Gc01879  
NCBI BioProject Name Acidithiobacillus caldus SM-1
NCBI BioProject ID 63223
NCBI BioProject Accession
PRJNA63223  
NCBI Locus Tag
ATC  
NCBI BioSample Accession
  
PI
Added By Ioanna Pagani on 2011-03-02
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center Chinese National Human Genome Center at Shanghai (China)
Collaborating Institute Chinese Academy of Sciences (China)
Funding Agency
  
Project Description
Source DNA and bacteria are available from State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences. It will not only help to discover the interesting physiology properties as well as the versatile strategies adopted by Acidithiobacillus caldus SM-1 to adapt and proliferate in extreme environments but also provide insights on its applications in biomining industry.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of genetics and genomics = Yi chuan xue bao 38(6):243-52 Unraveling the Acidithiobacillus caldus complete genome and its central metabolisms for carbon assimilation.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Acidithiobacillus caldus SM-1
Analysis Projects Acidithiobacillus caldus SM-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
61  
Chromosome Count
1  
Plasmid Count
4  
ORGANISM NAME
GOLD Organism ID Go0010621
Organism Name
Acidithiobacillus caldus SM-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Acidithiobacillus  
Genus Synonyms
  
Species
Acidithiobacillus caldus  
Subspecies
  
Species Synonyms
  
Strain
SM-1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 990288
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Acidithiobacillia  
NCBI Order
Acidithiobacillales  
NCBI Family
Acidithiobacillaceae  
NCBI Genus
Acidithiobacillus  
NCBI Species
Acidithiobacillus caldus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Thermophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms Sulfur oxidizer
Phenotypes Acidophile
Energy Sources
  

 

 

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