PROJECT INFORMATION
GOLD Project ID
Gp0010543  
Project Name
Verminephrobacter aporrectodeae tuberculatae At4  
Other Names
  
Legacy ER Project ID
2146  
Legacy GOLD ID
Gi09185  
NCBI BioProject Name Verminephrobacter aporrectodeae subsp. tuberculatae At4
NCBI BioProject ID 63657
NCBI BioProject Accession PRJNA63657
NCBI Locus Tag
VTU  
NCBI BioSample Accession SAMN02393706
PI
Added By Ionna Pagani on 2011-03-25
Last Modified By Supratim Mukherjee on 2020-08-19
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Aarhus University (Denmark)
Collaborating Institute
  
Funding Agency
  
Project Description
Verminephrobacter aporrectodeae tuberculatae At4 Genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Genome biology and evolution 4(3):307-15 Purifying selection and molecular adaptation in the genome of Verminephrobacter, the heritable symbiotic bacteria of earthworms.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Verminephrobacter aporrectodeae tuberculatae At4
Organism Verminephrobacter aporrectodeae tuberculatae At4
Analysis Projects Verminephrobacter aporrectodeae tuberculatae At4
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
66  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0010543
Organism Name
Verminephrobacter aporrectodeae tuberculatae At4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Verminephrobacter  
Genus Synonyms
  
Species
Verminephrobacter aporrectodeae  
Subspecies
tuberculatae  
Species Synonyms
  
Strain
At4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.23500  
Exemplar Name
Verminephrobacter aporrectodeae  
Taxon DOI
10.1601/tx.23500  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 565443
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Comamonadaceae  
NCBI Genus
Verminephrobacter  
NCBI Species
Verminephrobacter aporrectodeae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Annelida  
Ecosystem Type
Excretory system  
Ecosystem Subtype
Nephridia  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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