PROJECT NAME
GOLD Project ID
Gp0010484  
Project Name
Salmonella enterica enterica sv. Typhimurium UK-1  
Other Names
  
Legacy ER Project ID
19133  
Legacy GOLD ID
Gi09123, Gc01764  
NCBI BioProject Name Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1
NCBI BioProject ID 63211
NCBI BioProject Accession
PRJNA63211  
NCBI Locus Tag
STMUK  
NCBI BioSample Accession
  
PI Curtiss,R. III
Added By Ioanna Pagani on 2011-03-02
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Human Pathogen
Medical
Sequencing Center Arizona State University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread. Center for Infectious Diseases and Vaccinology, The Biodesign Institute, Arizona State University   
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(15):4035-6 Complete genome sequence of the universal killer Salmonella enterica Serovar Typhimurium UK-1 (ATCC 68169).
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Salmonella enterica enterica sv Typhimurium UK-1
Analysis Projects Salmonella enterica enterica sv. Typhimurium UK-1
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
52  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0010484
Organism Name
Salmonella enterica enterica sv. Typhimurium UK-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Salmonella  
Genus Synonyms
  
Species
Salmonella enterica  
Subspecies
enterica  
Species Synonyms
  
Strain
UK-1  
Strain Synonyms
  
Serovar-Biovar
Typhimurium  
Culture Collection ID
ATCC 68169  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 990282
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacteriales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Salmonella  
NCBI Species
Salmonella enterica  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases Food poisoning
Gastroenteritis
Salmonellosis
Known Habitats Food
Fresh water
Host
Soil
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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