PROJECT NAME
GOLD Project ID
Gp0010274  
Project Name
Chlamydophila pecorum E58  
Other Names
  
Legacy ER Project ID
19086  
Legacy GOLD ID
Gi08990, Gc01717  
NCBI BioProject Name Chlamydophila pecorum E58
NCBI BioProject ID 62893
NCBI BioProject Accession
PRJNA62893  
NCBI Locus Tag
G5S  
NCBI BioSample Accession
  
PI
Added By Ioanna Pagani on 2011-02-15
Last Modified By Auto script update processes on 2014-05-20
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Human Pathogen
Medical
Sequencing Center University of Maryland School of Medicine (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
C. pecorum is a species of Chlamydiaceae prevalent in mammals, notably: cattle, sheep and goats (ruminants), koalas (marsupials), and swine. C. pecorum strains are serologically and pathogenically diverse. E58 is the first C. pecorum strain sequenced.   
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(14):3690 Genome sequence of the obligate intracellular animal pathogen Chlamydia pecorum E58.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Chlamydophila pecorum E58
Analysis Projects Chlamydophila pecorum E58
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
41  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0010274
Organism Name
Chlamydophila pecorum E58  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLAMYDIAE  
Genus
Chlamydophila  
Genus Synonyms
  
Species
Chlamydophila pecorum  
Subspecies
  
Species Synonyms
  
Strain
E58  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC VR-628  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7769  
Exemplar Name
Chlamydophila pecorum  
Taxon DOI
10.1601/tx.7778  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 331635
NCBI Kingdom
  
NCBI Phylum
Chlamydiae  
NCBI Class
Chlamydiia  
NCBI Order
Chlamydiales  
NCBI Family
Chlamydiaceae  
NCBI Genus
Chlamydia  
NCBI Species
Chlamydia pecorum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID D88317
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Parasitic  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Bronchitis
Pharyngitis
Pneumonia
Respiratory infection
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?