PROJECT NAME
GOLD Project ID
Gp0009818  
Project Name
Bradyrhizobium elkanii USDA 3259  
Other Names
  
Legacy ER Project ID
18953  
Legacy GOLD ID
Gi22151  
NCBI BioProject Name Bradyrhizobium elkanii USDA 3259
NCBI BioProject ID 162999
NCBI BioProject Accession
PRJNA162999  
NCBI Locus Tag
YUG  
NCBI BioSample Accession
SAMN02440775  
PI Nikos Kyrpides
Added By Ioanna Pagani on 2011-02-10
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Agricultural
Comparative analysis
Root Nodulating Bacteria (RNB)
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Root Nodulating Bacteria.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies GEBA - Root Nodulating Bacteria
Analysis Projects Bradyrhizobium elkanii USDA 3259
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0009818
Organism Name
Bradyrhizobium elkanii USDA 3259  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Bradyrhizobium  
Genus Synonyms
  
Species
Bradyrhizobium elkanii  
Subspecies
  
Species Synonyms
  
Strain
USDA 3259  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1079466
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Bradyrhizobiaceae  
NCBI Genus
Bradyrhizobium  
NCBI Species
Bradyrhizobium elkanii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
  
pH
5-8  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Phaseolus lunatus  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Host
Plant root
Root nodule
Soil
Metabolisms Nitrogen fixation
Phenotypes Non-Pathogen
Energy Sources
  

 

 

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