PROJECT NAME
GOLD Project ID
Gp0009718  
Project Name
Lacinutrix sp. 5H-3-7-4  
Other Names
  
Legacy ER Project ID
1928  
Legacy GOLD ID
Gi08991, Gc01838  
NCBI BioProject Name Lacinutrix sp. 5H-3-7-4
NCBI BioProject ID 62899
NCBI BioProject Accession
PRJNA62899  
NCBI Locus Tag
Lacal  
NCBI BioSample Accession
SAMN00713635  
PI Antranikian, Garabed
Added By Ioanna Pagani on 2011-02-09
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Hamburg University of Technology (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Lacinutrix sp. 5H-3-7-4 genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Publication
Database
  
Genome Publications Journal of bacteriology 193(17):4545-6 Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Carbohydrate degrading bacteria from deep sea
Analysis Projects Lacinutrix sp. 5H-3-7-4
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
31  
Chromosome Count
1  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0009718
Organism Name
Lacinutrix sp. 5H-3-7-4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Lacinutrix  
Genus Synonyms
  
Species
Lacinutrix sp. 5H-3-7-4  
Subspecies
  
Species Synonyms
  
Strain
5H-3-7-4  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 983544
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Flavobacteriia  
NCBI Order
Flavobacteriales  
NCBI Family
Flavobacteriaceae  
NCBI Genus
Lacinutrix  
NCBI Species
Lacinutrix sp. 5H-3-7-4  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Psychrophile  
Temperature Optimum
17.5C  
Salinity
  
pH
6.5  
Cell Diameter
0.5-0.6um  
Cell Length
0.7-1.7um  
Color
Yellow  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sea water
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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