PROJECT NAME
GOLD Project ID
Gp0009609  
Project Name
Azorhizobium doebereinerae UFLA1-100  
Other Names
  
Legacy ER Project ID
18949  
Legacy GOLD ID
Gi08849  
NCBI BioProject Name Azorhizobium doebereinerae UFLA1-100
NCBI BioProject ID 162983
NCBI BioProject Accession
PRJNA162983  
NCBI Locus Tag
YU1  
NCBI BioSample Accession
SAMN02440776  
PI Nikos Kyrpides
Added By Ioanna Pagani on 2011-02-10
Last Modified By Auto script update processes on 2014-08-18
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Agricultural
Biotechnological
GEBA-RNB
Root Nodulating Bacteria (RNB)
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Murdoch University (Australia)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Root Nodulating Bacteria.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies GEBA - Root Nodulating Bacteria
Analysis Projects Azorhizobium doebereinerae UFLA1-100
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0009609
Organism Name
Azorhizobium doebereinerae UFLA1-100  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Azorhizobium  
Genus Synonyms
  
Species
Azorhizobium doebereinerae  
Subspecies
  
Species Synonyms
  
Strain
UFLA1-100  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10190  
Exemplar Name
Azorhizobium doebereinerae  
Taxon DOI
10.1601/tx.10190  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1038858
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Xanthobacteraceae  
NCBI Genus
Azorhizobium  
NCBI Species
Azorhizobium doebereinerae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
  
pH
5-8  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 1
Term Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Sesbania virgata  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Host
Plant root
Root nodule
Soil
Metabolisms Nitrogen fixation
Phenotypes Non-Pathogen
Energy Sources
  

 

 

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