PROJECT INFORMATION
GOLD Project ID
Gp0009530  
Project Name
Eggerthia catenaformis OT 569  
Other Names
  
Legacy ER Project ID
18304  
Legacy GOLD ID
Gi08348  
NCBI BioProject Name Eggerthia catenaformis OT 569 = DSM 20559
NCBI BioProject ID 64881
NCBI BioProject Accession PRJNA64881
NCBI Locus Tag
HMPREF9943  
NCBI BioSample Accession SAMN02596729
PI Birren, B
Added By Konstantinos Liolios on 2010-11-10
Last Modified By Jyothi Mallajosyula on 2015-02-25
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Eggerthia catenaformis OT 569
Analysis Projects Eggerthia catenaformis OT 569
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
33  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013777
Organism Name
Eggerthia catenaformis OT 569  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Eggerthia  
Genus Synonyms
Lactobacillus  
Species
Eggerthia catenaformis  
Subspecies
  
Species Synonyms
  
Strain
OT 569  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 20559  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.5348  
Exemplar Name
Eggerthia catenaformis  
Taxon DOI
10.1601/tx.22581  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 999415
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Erysipelotrichia  
NCBI Order
Erysipelotrichales  
NCBI Family
Erysipelotrichaceae  
NCBI Genus
Eggerthia  
NCBI Species
Eggerthia catenaformis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral cavity  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 13426
Genbank 16S ID AJ621549
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Chains
Diseases
  
Known Habitats Host
Human
Metabolisms
  
Phenotypes Catalase negative
Energy Sources
  
HMP METADATA
HMP ID
9943  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
5. annotation (and sequence) submitted to NCBI  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2010-10-27  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
HOMD: tax_569  

 

 

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