PROJECT NAME
GOLD Project ID
Gp0009356  
Project Name
Alteromonas sp. SN2  
Other Names
  
Legacy ER Project ID
1712  
Legacy GOLD ID
Gi10483, Gc02083  
NCBI BioProject Name Alteromonas sp. SN2
NCBI BioProject ID 59947
NCBI BioProject Accession
PRJNA59947  
NCBI Locus Tag
AMBT  
NCBI BioSample Accession
  
PI Che Ok Jeon
Added By Che Ok Jeon on 2010-11-04
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biodegradation of pollutants
Bioremediation
Environmental
Marine Microbial Initiative (MMI)
Sequencing Center National Instrumentation Center for Environmental Management Korea (South Korea)
Collaborating Institute Chung-Ang University (South Korea)
Funding Agency
  
Project Description
Isolate was obtained from crude oil contaminated sea site and has a capacity to degrade PAH's compounds present in crude oil. It can be used for bioremediation.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(16):4292-3 Complete genome sequence of the polycyclic aromatic hydrocarbon-degrading bacterium Alteromonas sp. strain SN2.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Alteromonas taeanensis SN2
Analysis Projects Alteromonas sp. SN2
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
44  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0009356
Organism Name
Alteromonas sp. SN2  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Alteromonas  
Genus Synonyms
  
Species
Alteromonas sp. SN2  
Subspecies
  
Species Synonyms
  
Strain
SN2  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
KACC 91504P  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 715451
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Alteromonadales  
NCBI Family
Alteromonadaceae  
NCBI Genus
Alteromonas  
NCBI Species
Alteromonas naphthalenivorans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Sediment  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID GU166736
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28  
Salinity
Halophile  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Sediment
Metabolisms Oil degrading
PAH-degrading
Phenotypes Biodegradation
Fast growing
Saline
Energy Sources Copiotroph
Oligotroph
CYANOBACTERIA METADATA
Filaments
Yes  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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