PROJECT INFORMATION
GOLD Project ID
Gp0009015  
Project Name
Serratia plymuthica AS12  
Other Names
  
Legacy ER Project ID
18376  
Legacy GOLD ID
Gi08426, Gc01771  
NCBI BioProject Name Serratia sp. AS12
NCBI BioProject ID 60453
NCBI BioProject Accession PRJNA60453
NCBI Locus Tag
SerAS12  
NCBI BioSample Accession SAMN00713623
PI Nils Hoegberg
Added By Ionna Pagani on 2010-11-24
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Biocontrol
Agricultural
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Los Alamos National Laboratory (USA)
Oak Ridge National Laboratory (USA)
ANRT (France)
Leibniz Institute (Germany)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Serratia sp. AS12 genome sequencing project  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Publication
Database
  
Genome Publications Standards in genomic sciences 6(2):165-73 Complete genome sequence of Serratia plymuthica strain AS12.
Other Publications
  
PROJECT COMPOSITION
Study Genomics of four rapeseed plant growth promoting bacteria with antagonistic effect on plant pathogens.
Analysis Projects Serratia plymuthica AS12
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAIIx
454 GS FLX Titanium
Library Method (MIGS-28)
One 454 standard library, one paired end 454 library (12 kb insert size) and one Illumina library  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
56  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0009015
Organism Name
Serratia plymuthica AS12  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Serratia  
Genus Synonyms
  
Species
Serratia plymuthica AS12  
Subspecies
  
Species Synonyms
  
Strain
AS12  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CCUG 61397  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 768490
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Yersiniaceae  
NCBI Genus
Serratia  
NCBI Species
Serratia sp. AS12  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
28C  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
Endosymbiotic extracellular  
Symbiotic Relationship
  
Symbiont Name
Brassica napus  
Symbiont Taxon ID
3708  
Cell Arrangements
  
Diseases None
Known Habitats Host
Plant root
Metabolisms
  
Phenotypes
  
Energy Sources Chemoorganotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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