PROJECT INFORMATION
GOLD Project ID
Gp0008455  
Project Name
Algoriphagus machipongonensis PR1  
Other Names
  
Legacy ER Project ID
18539  
Legacy GOLD ID
Gc01568, Gi09039  
NCBI BioProject Name Algoriphagus sp. PR1
NCBI BioProject ID 18947
NCBI BioProject Accession PRJNA18947
NCBI Locus Tag
ALPR1  
NCBI BioSample Accession SAMN02436092
PI Rosanna A. Alegado
Added By Nikos Kyrpides on 2010-12-27
Last Modified By Galina Ovchinnikova on 2017-03-28
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Sequencing Center Broad Institute (USA)
J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute University of California, Berkeley (USA)
Funding Agency NIH (USA)
Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
isolated for its ability to induce colony formation in the choanoflagellate Proterospongia sp.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(6):1485-6 Complete genome sequence of Algoriphagus sp. PR1, bacterial prey of a colony-forming choanoflagellate.
Other Publications
  
PROJECT COMPOSITION
Study Algoriphagus machipongonensis PR1
Analysis Projects Algoriphagus machipongonensis PR1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
39  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0008455
Organism Name
Algoriphagus machipongonensis PR1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Algoriphagus  
Genus Synonyms
  
Species
Algoriphagus machipongonensis  
Subspecies
  
Species Synonyms
  
Strain
PR1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC BAA-2233  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.23748  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 388413
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Cytophagia  
NCBI Order
Cytophagales  
NCBI Family
Cyclobacteriaceae  
NCBI Genus
Algoriphagus  
NCBI Species
Algoriphagus machipongonensis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Sediment  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
Salpingoeca rosetta  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Mud
Host
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph

 

 

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