PROJECT NAME
GOLD Project ID
Gp0008362  
Project Name
Agrobacterium sp. H13-3  
Other Names
  
Legacy ER Project ID
17501  
Legacy GOLD ID
Gi07276, Gc01627  
NCBI BioProject Name Agrobacterium sp. H13-3
NCBI BioProject ID 50341
NCBI BioProject Accession
PRJNA50341  
NCBI Locus Tag
AGROH133  
NCBI BioSample Accession
  
PI Andreas Schl?ter
Added By Ioanna Pagani on 2010-07-06
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance
  
Sequencing Center Bielefeld University (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
established as prototype for studying novel features of flagellum structure, motility and chemotaxis  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of biotechnology 155(1):50-62 Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid.
Other Publications
  
PROJECT COMPOSITION
Studies Agrobacterium sp. H13-3
Analysis Projects Agrobacterium sp. H13-3
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
59  
Chromosome Count
2  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0008362
Organism Name
Agrobacterium sp. H13-3  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Agrobacterium  
Genus Synonyms
Rhizobium  
Species
Agrobacterium sp. H13-3  
Subspecies
  
Species Synonyms
lupini  
Strain
H13-3  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 861208
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Rhizobiaceae  
NCBI Genus
Agrobacterium  
NCBI Species
Agrobacterium sp. H13-3  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
Chemotactic  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Rhizosphere
Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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