PROJECT INFORMATION
GOLD Project ID
Gp0008348  
Project Name
Puccinia striiformis f. sp. tritici Race 130  
Other Names
  
Legacy ER Project ID
17710  
Legacy GOLD ID
Gi07527  
NCBI BioProject Name Puccinia striiformis f. sp. tritici PST-130
NCBI BioProject ID 51241
NCBI BioProject Accession PRJNA51241
NCBI Locus Tag
PST130  
NCBI BioSample Accession SAMN00025370
PI
Added By Ionna Pagani on 2010-08-10
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of California, Davis (USA)
Collaborating Institute University of California, Davis (USA)
Funding Agency
  
Project Description
Puccinia striiformis f. sp. tritici PST-130 genome sequencing project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PloS one 6(8):e24230 Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX022218  (Link to NCBI )
Experiment Title Illumina sequencing of wheat rust genomic paired-end library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PST130 spores
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER
 
SRA Experiment Id SRX022476  (Link to NCBI )
Experiment Title Illumina sequencing of wheat rust genomic paired-end library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PST130 spores
Library Layout PAIRED
Library Instrument ILLUMINA_GENOME_ANALYZER
PROJECT COMPOSITION
Study Puccinia striiformis f. sp. tritici Race 130
Organism Puccinia striiformis f. sp. tritici Race 130
Analysis Projects Puccinia striiformis f. sp. tritici Race 130
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Solexa
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0008348
Organism Name
Puccinia striiformis f. sp. tritici Race 130  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-BASIDIOMYCOTA  
Genus
Puccinia  
Genus Synonyms
  
Species
Puccinia striiformis  
Subspecies
  
Species Synonyms
  
Strain
tritici Race 130  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 168172
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Basidiomycota  
NCBI Class
Pucciniomycetes  
NCBI Order
Pucciniales  
NCBI Family
Pucciniaceae  
NCBI Genus
Puccinia  
NCBI Species
Puccinia striiformis  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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