PROJECT NAME
GOLD Project ID
Gp0008201  
Project Name
Homo sapiens Saqqaq  
Other Names
  
Legacy ER Project ID
17468  
Legacy GOLD ID
Gi07211  
NCBI BioProject Name Homo sapiens
NCBI BioProject ID 46213
NCBI BioProject Accession
PRJNA46213  
NCBI Locus Tag
  
NCBI BioSample Accession
  
PI
Added By Ioanna Pagani on 2010-07-01 00:00:00.0
Last Modified By Michelle Isbandi on 2014-01-09 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
incomplete  
Project Relevance Medical
Sequencing Center
  
Collaborating Institute University of Copenhagen (Denmark)
Funding Agency
  
Project Description
The first ancient human genome. Obtained from ~4000 year old hair preserved in the Greenlandic permafrost, the genome represents a male individual from the first known culture to have settled the New World Arctic. Through the application of biochemical and statistical approaches, we ensured that the effect of DNA-damage and sequencing derived errors is negligible. Sequenced to an average depth of 20x, we recover 79% of the diploid genome, an amount close to the practical limit of current sequencing technologies.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Publication
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Homo sapiens Saqqaq
Analysis Projects
  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
3500000000  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0008201
Organism Name
Homo sapiens Saqqaq  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Homo  
Genus Synonyms
  
Species
Homo sapiens  
Subspecies
  
Species Synonyms
  
Strain
Saqqaq  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 9606
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Primates  
NCBI Family
Hominidae  
NCBI Genus
Homo  
NCBI Species
Homo sapiens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
36  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes Caucasian
Male
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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