PROJECT NAME
GOLD Project ID
Gp0008160  
Project Name
Homo sapiens BGI (Asian male)  
Other Names
  
Legacy ER Project ID
17451  
Legacy GOLD ID
Gi07189  
NCBI BioProject Name Homo sapiens
NCBI BioProject ID 42199
NCBI BioProject Accession
PRJNA42199  
NCBI Locus Tag
YHI  
NCBI BioSample Accession
SAMN00003318  
PI
Added By Ioanna Pagani on 2010-06-30
Last Modified By Jakob Jansson on 2010-12-16
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center
  
Collaborating Institute Beijing Genomics Institute (BGI) (China)
Funding Agency
  
Project Description
Genomic DNA was extracted from peripheral venous blood from a male Asian individual and sequenced to 71X depth of coverage using Illumina Genome Analyzer. A de novo assembly, named YH1, was subsequently generated from the short read data. A comparison of the Asian YH1 assembly, the African BGIAF assembly, and the reference genome assembly resulted in the identification of novel sequence data not represented in the reference assembly.   
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Publication
Database
  
Genome Publications Nature biotechnology 28(1):57-63 Building the sequence map of the human pan-genome.
Other Publications
  
PROJECT COMPOSITION
Studies Homo sapiens BGI (Asian male)
Analysis Projects Homo sapiens BGI (Asian male)
SEQUENCING INFORMATION
Sequencing Status Draft
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina GAii
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0008160
Organism Name
Homo sapiens BGI (Asian male)  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Homo  
Genus Synonyms
  
Species
Homo sapiens  
Subspecies
  
Species Synonyms
  
Strain
BGI (Asian male)  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 9606
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Primates  
NCBI Family
Hominidae  
NCBI Genus
Homo  
NCBI Species
Homo sapiens  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
36  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes Caucasian
Male
Energy Sources
  

 

 

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