PROJECT NAME
GOLD Project ID
Gp0007908  
Project Name
Burkholderiales sp. JOSHI_001  
Other Names
  
Legacy ER Project ID
17739  
Legacy GOLD ID
Gi07557  
NCBI BioProject Name Burkholderiales bacterium JOSHI_001
NCBI BioProject ID 59875
NCBI BioProject Accession
PRJNA59875  
NCBI Locus Tag
BurJ1  
NCBI BioSample Accession
SAMN02261382  
PI Lewis, Gillian
Added By Ioanna Pagani on 2010-09-02
Last Modified By Auto script update processes on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of Auckland (New Zealand)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
JOSHI_001; a freshwater manganese depositing -proteobacterium and first representative of the Siderocapsaceae.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Studies JOSHI_001; a freshwater manganese depositing -proteobacterium and first representative of the Siderocapsaceae.
Analysis Projects Burkholderiales sp. JOSHI_001
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 5: Non-contiguous Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
69  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007908
Organism Name
Burkholderiales sp. JOSHI_001  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
  
Genus Synonyms
  
Species
  
Subspecies
  
Species Synonyms
  
Strain
JOSHI_001  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 864051
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
  
NCBI Genus
  
NCBI Species
Burkholderiales bacterium JOSHI_001  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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