PROJECT INFORMATION
GOLD Project ID
Gp0006910  
Project Name
alpha proteobacterium sp. HIMB59  
Other Names
  
Legacy ER Project ID
16881  
Legacy GOLD ID
Gi06359, Gc0016881  
NCBI BioProject Name alpha proteobacterium HIMB59
NCBI BioProject ID 46519
NCBI BioProject Accession PRJNA46519
NCBI Locus Tag
HIMB59  
NCBI BioSample Accession
PI
Added By Nikos Kyrpides on 2010-03-12
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Marine Microbial Initiative (MMI)
Environmental
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
irst known cultured isolate from a clade of marine bacterioplankton which appears to share an ancient evolutionary history with the SAR11 clade of bacterioplankton.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Moore Foundation
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study alpha proteobacterium sp. HIMB59
Analysis Projects alpha proteobacterium sp. HIMB59
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
32  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0006910
Organism Name
alpha proteobacterium sp. HIMB59  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
  
Genus Synonyms
  
Species
alpha proteobacterium sp. HIMB59  
Subspecies
  
Species Synonyms
  
Strain
HIMB59  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 744985
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Pelagibacterales  
NCBI Family
Pelagibacteraceae  
NCBI Genus
  
NCBI Species
alpha proteobacterium HIMB59  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Marine
Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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