PROJECT INFORMATION
GOLD Project ID
Gp0006618  
Project Name
Amycolatopsis mediterranei S699, ATCC 13685  
Other Names
  
Legacy ER Project ID
580  
Legacy GOLD ID
Gi05969, Gc01914  
NCBI BioProject Name Amycolatopsis mediterranei S699
NCBI BioProject ID 43503
NCBI BioProject Accession PRJNA43503
NCBI Locus Tag
RAM  
NCBI BioSample Accession
PI rup lal
Added By Nikos Kyrpides on 2010-01-31
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Antibiotic production
Pharmaceutical
Biotechnological
Sequencing Center University of Delhi (India)
Collaborating Institute
  
Funding Agency
  
Project Description
produces antibiotic rifamycin, derivatives of which are used for curing tuberculosis and leprosy  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Journal of bacteriology 193(19):5562-3 Whole genome sequence of the rifamycin B-producing strain Amycolatopsis mediterranei S699.
Other Publications
  
PROJECT COMPOSITION
Study Amycolatopsis mediterranei S699
Analysis Projects Amycolatopsis mediterranei S699, ATCC 13685
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
454 GS20
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
71  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0006618
Organism Name
Amycolatopsis mediterranei S699, ATCC 13685  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Amycolatopsis  
Genus Synonyms
  
Species
Amycolatopsis mediterranei  
Subspecies
  
Species Synonyms
  
Strain
S699, ATCC 13685  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 13685  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.6445  
Exemplar Name
Amycolatopsis mediterranei  
Taxon DOI
10.1601/tx.6719  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 713604
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Pseudonocardiales  
NCBI Family
Pseudonocardiaceae  
NCBI Genus
Amycolatopsis  
NCBI Species
Amycolatopsis mediterranei  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Soil
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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