PROJECT INFORMATION
GOLD Project ID
Gp0004992  
Project Name
Candidatus Hodgkinia cicadicola Dsem  
Other Names
  
Legacy ER Project ID
328  
Legacy GOLD ID
Gi04217, Gc01060  
NCBI BioProject Name Candidatus Hodgkinia cicadicola Dsem
NCBI BioProject ID 32135
NCBI BioProject Accession PRJNA32135
NCBI Locus Tag
HCDSEM  
NCBI BioSample Accession SAMN02604136
PI McCutcheon JP
Added By Nikos Kyrpides on 2009-04-12
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center University of Arizona (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
This strain will be used for comparative genome analysis  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PLoS genetics 5(7):e1000565 Origin of an alternative genetic code in the extremely small and GC-rich genome of a bacterial symbiont.
Other Publications
  
PROJECT COMPOSITION
Study Candidatus Hodgkinia cicadicola Dsem
Analysis Projects Candidatus Hodgkinia cicadicola Dsem Reanalysis
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX
Illumina
Library Method (MIGS-28)
  
Number Of Reads
523979 (FLX), 12965640 (Illumina)  
Read Size
  
Vector
  
GC Percent
58  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004992
Organism Name
Candidatus Hodgkinia cicadicola Dsem  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
  
Genus Synonyms
  
Species
Candidatus Hodgkinia cicadicola Dsem  
Subspecies
  
Species Synonyms
  
Strain
Dsem  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 573234
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
  
NCBI Genus
Candidatus Hodgkinia  
NCBI Species
Candidatus Hodgkinia cicadicola  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Insecta  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
  
Symbiont Name
Diceroprocta semicincta  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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