PROJECT NAME
GOLD Project ID
Gp0004957  
Project Name
Coccomyxa subellipsoidea C-169  
Other Names
  
Legacy ER Project ID
14685  
Legacy GOLD ID
Gi02114, Gi04173  
NCBI BioProject Name Coccomyxa subellipsoidea C-169
NCBI BioProject ID 32657
NCBI BioProject Accession
PRJNA32657  
NCBI Locus Tag
COCSU  
NCBI BioSample Accession
SAMN02744078  
PI Van Etten, James L
Added By Nikos Kyrpides on 2009-03-14
Last Modified By Michelle Isbandi on 2016-02-11
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance ALGAE
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Coccomyxa subellipsoidea C-169 Genome sequencing project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Taxonomy
Database
  
Genome Publications Genome biology 13(5):R39 The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
Other Publications
  
PROJECT COMPOSITION
Studies Chlorella NC64A and Chlorella vulgaris C169
Analysis Projects Coccomyxa subellipsoidea C-169
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
49193098  
Vector
  
GC Percent
53  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004957
Organism Name
Coccomyxa subellipsoidea C-169  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-CHLOROPHYTA  
Genus
Coccomyxa  
Genus Synonyms
  
Species
Coccomyxa subellipsoidea  
Subspecies
  
Species Synonyms
  
Strain
C-169  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 574566
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Chlorophyta  
NCBI Class
Trebouxiophyceae  
NCBI Order
  
NCBI Family
Coccomyxaceae  
NCBI Genus
Coccomyxa  
NCBI Species
Coccomyxa subellipsoidea  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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