PROJECT INFORMATION
GOLD Project ID
Gp0004821  
Project Name
Calothrix sp. PCC 7103  
Other Names
  
Legacy ER Project ID
14828  
Legacy GOLD ID
Gi09598  
NCBI BioProject Name Calothrix sp. PCC 7103
NCBI BioProject ID 159495
NCBI BioProject Accession PRJNA159495
NCBI Locus Tag
Cal7103  
NCBI BioSample Accession SAMN02261256
PI Cheryl Kerfeld
Added By Cheryl Kerfeld on 2009-05-08
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Tree of Life
GEBA-PCC
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The CyanoGEBA Sequencing Project is part of the DOE Joint Genome Institute?s Genomic Encyclopedia of Bacteria and Archaea initiative. The CyanoGEBA project is a collaboration between the JGI and the Pasteur Culture Collection aimed at improving sequencing coverage of the cyanobacterial phylum based on phylogenetic criteria.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 110(3):1053-8 Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study GEBA-PCC
Organism Calothrix sp. PCC 7103
Analysis Projects Calothrix sp. PCC 7103
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
39  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0004821
Organism Name
Calothrix sp. PCC 7103  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Calothrix  
Genus Synonyms
Nodularia  
Species
Calothrix sp. PCC 7103  
Subspecies
  
Species Synonyms
sphaerocarpa  
Strain
PCC 7103  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
PCC 7103  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 32057
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Nostocales  
NCBI Family
Calotrichaceae  
NCBI Genus
Calothrix  
NCBI Species
Calothrix sp. PCC 7103  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Filaments
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources Chemoheterotroph

 

 

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