PROJECT NAME
GOLD Project ID
Gp0004428  
Project Name
Bifidobacterium longum longum JCM 1217  
Other Names
  
Legacy ER Project ID
14617  
Legacy GOLD ID
Gi04116, Gc01612  
NCBI BioProject Name Bifidobacterium longum subsp. longum JCM 1217
NCBI BioProject ID 32047
NCBI BioProject Accession
PRJDA32047  
NCBI Locus Tag
BLLJ  
NCBI BioSample Accession
  
PI Hattori M
Added By Heather Creasy on 2009-02-22
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Food industry
Human Microbiome Project (HMP)
Medical
Sequencing Center
  
Collaborating Institute University of Tokyo (Switzerland)
Funding Agency
  
Project Description
This strain will be used for comparative genome analysis  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Database
  
Genome Publications Nature 469(7331):543-7 Bifidobacteria can protect from enteropathogenic infection through production of acetate.
Other Publications
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Bifidobacterium longum longum JCM 1217
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
60  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0004428
Organism Name
Bifidobacterium longum longum JCM 1217  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Bifidobacterium  
Genus Synonyms
  
Species
Bifidobacterium longum  
Subspecies
longum  
Species Synonyms
  
Strain
JCM 1217  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
JCM 1217  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7698  
Exemplar Name
Bifidobacterium longum  
Taxon DOI
10.1601/tx.7698  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 565042
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Bifidobacteriales  
NCBI Family
Bifidobacteriaceae  
NCBI Genus
Bifidobacterium  
NCBI Species
Bifidobacterium longum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID M58739
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Metabolisms
  
Phenotypes Commensal
Energy Sources
  
HMP METADATA
HMP ID
918  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
  
Date DNA Received
  
Date Sequencing Begins
  
Date Draft Sequencing Completed
  
Cross Reference ID
  

 

 

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