PROJECT NAME
GOLD Project ID
Gp0004000  
Project Name
Acinetobacter baumannii ATCC 19606, CIP 70.34  
Other Names
  
Legacy ER Project ID
13941  
Legacy GOLD ID
Gi03422  
NCBI BioProject Name Acinetobacter baumannii ATCC 19606
NCBI BioProject ID 38509
NCBI BioProject Accession
PRJNA38509  
NCBI Locus Tag
HMPREF0010  
NCBI BioSample Accession
SAMN02463741  
PI Birren B
Added By Heather Creasy on 2008-09-14
Last Modified By Auto script update processes on 2014-10-31
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Comparative analysis
Human Microbiome Project (HMP)
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information HMP
Database
  
Genome Publications PloS one 7(10):e46984 The success of acinetobacter species; genetic, metabolic and virulence attributes.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Human Microbiome Project (HMP) Reference Genomes
Analysis Projects Acinetobacter baumannii ATCC 19606, CIP 70.34
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX
Library Method (MIGS-28)
  
Number Of Reads
397733  
Read Size
  
Vector
  
GC Percent
39  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0032321
Organism Name
Acinetobacter baumannii ATCC 19606, CIP 70.34  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Acinetobacter  
Genus Synonyms
  
Species
Acinetobacter baumannii  
Subspecies
  
Species Synonyms
  
Strain
ATCC 19606  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 19606  
Type Strain
Unknown  
Exemplar DOI
10.1601/ex.2767  
Exemplar Name
Acinetobacter baumannii  
Taxon DOI
10.1601/tx.2767  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 575584
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Moraxellaceae  
NCBI Genus
Acinetobacter  
NCBI Species
Acinetobacter baumannii  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Excretory system  
Ecosystem Subtype
Urethra  
Specific Ecosystem
Urine  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID X81660
Synonym List
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Nosocomial infection
Pneumonia
Known Habitats Fresh water
Host
Human skin
Skin
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoheterotroph
Heterotroph
HMP METADATA
HMP ID
10  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Urogenital tract  
HMP Isolation Body Sample Subsite
Urinary tract  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
isolates available  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2009-03-08  
Date Sequencing Begins
2009-03-08  
Date Draft Sequencing Completed
2009-08-19  
Cross Reference ID
HOMD: tax_554  

 

 

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