PROJECT NAME
GOLD Project ID
Gp0002244  
Project Name
Burkholderia phytofirmans PsJN  
Other Names
  
Legacy ER Project ID
12141  
Legacy GOLD ID
Gi01328, Gc00795  
NCBI BioProject Name Burkholderia phytofirmans PsJN
NCBI BioProject ID 17463
NCBI BioProject Accession
PRJNA17463  
NCBI Locus Tag
Bphyt  
NCBI BioSample Accession
SAMN02598395  
PI James Tiedje
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Beneficial plant-associated bacterium  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Database
  
Genome Publications Journal of bacteriology 193(13):3383-4 Complete genome sequence of the plant growth-promoting endophyte Burkholderia phytofirmans strain PsJN.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies 4 Burkholderia
Analysis Projects Burkholderia phytofirmans PsJN
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
2  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0002244
Organism Name
Burkholderia phytofirmans PsJN  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Burkholderia  
Genus Synonyms
  
Species
Burkholderia phytofirmans  
Subspecies
  
Species Synonyms
  
Strain
PsJN  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
LMG 22146  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.9441  
Exemplar Name
Burkholderia phytofirmans  
Taxon DOI
10.1601/tx.9441  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 398527
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Burkholderiaceae  
NCBI Genus
Paraburkholderia  
NCBI Species
Paraburkholderia phytofirmans  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 382964
Genbank 16S ID AY497470
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
30  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Soil
Metabolisms Nitrogen fixation
Phenotypes
  
Energy Sources
  

 

 

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