PROJECT INFORMATION
GOLD Project ID
Gp0002005  
Project Name
Phenylobacterium zucineum HLK1  
Other Names
  
Legacy ER Project ID
11903  
Legacy GOLD ID
Gi02455, Gc00847  
NCBI BioProject Name Phenylobacterium zucineum HLK1
NCBI BioProject ID 19931
NCBI BioProject Accession PRJNA19931
NCBI Locus Tag
PHZ  
NCBI BioSample Accession SAMN02603048
PI Luo Y
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Medical
Sequencing Center Beijing Genomics Institute (BGI) (China)
Collaborating Institute Zhejiang University (China)
Funding Agency
  
Project Description
Isolated from human leukemia cell line HLK1  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Taxonomy
Entrez
Isolation
Database
  
Genome Publications BMC genomics 9(386):386 Complete genome of Phenylobacterium zucineum--a novel facultative intracellular bacterium isolated from human erythroleukemia cell line K562.
Other Publications
  
PROJECT COMPOSITION
Study Phenylobacterium zucineum HLK1
Analysis Projects Phenylobacterium zucineum HLK1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
2.0¿2.5 kb, 2.5¿3.0 kb and 3.5¿4.0 kb  
Number Of Reads
44667  
Read Size
  
Vector
puC18  
GC Percent
71  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0002005
Organism Name
Phenylobacterium zucineum HLK1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Phenylobacterium  
Genus Synonyms
  
Species
Phenylobacterium zucineum  
Subspecies
  
Species Synonyms
  
Strain
HLK1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
CGMCC 1.3786  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.27128  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 450851
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Caulobacterales  
NCBI Family
Caulobacteraceae  
NCBI Genus
Phenylobacterium  
NCBI Species
Phenylobacterium zucineum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Reproductive system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
6.5 - 7.5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Unknown
Known Habitats Host
Metabolisms
  
Phenotypes Nonfermentative
Energy Sources
  

 

 

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