PROJECT NAME
GOLD Project ID
Gp0001691  
Project Name
Candidatus Nitrospira defluvii  
Other Names
  
Legacy ER Project ID
11588  
Legacy GOLD ID
Gi01879, Gc01487  
NCBI BioProject Name Candidatus Nitrospira defluvii
NCBI BioProject ID 46433
NCBI BioProject Accession
PRJEA46433  
NCBI Locus Tag
NIDE  
NCBI BioSample Accession
  
PI Daims H
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center CEA Genoscope (France)
Collaborating Institute University of Vienna (Austria)
Funding Agency
  
Project Description
Candidatus Nitrospira defluvii genome sequencing  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Information
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 107(30):13479-84 A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria.
Other Publications
  
PROJECT COMPOSITION
Studies Candidatus Nitrospira defluvii
Analysis Projects Candidatus Nitrospira defluvii
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3kb, 6kb, fosmid inserts  
Number Of Reads
99629  
Read Size
  
Vector
pCC1FOS, pCNS, pCDNA2.1  
GC Percent
59  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0001691
Organism Name
Candidatus Nitrospira defluvii  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
NITROSPIRAE  
Genus
Candidatus Nitrospira  
Genus Synonyms
  
Species
Candidatus Nitrospira defluvii  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 330214
NCBI Kingdom
  
NCBI Phylum
Nitrospirae  
NCBI Class
Nitrospira  
NCBI Order
Nitrospirales  
NCBI Family
Nitrospiraceae  
NCBI Genus
Nitrospira  
NCBI Species
Nitrospira defluvii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Surface water
Metabolisms Nitrite-oxidizer
Phenotypes
  
Energy Sources
  

 

 

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