PROJECT NAME
GOLD Project ID
Gp0001280  
Project Name
Ulvibacter sp. SCB49  
Other Names
  
Legacy ER Project ID
11181  
Legacy GOLD ID
Gi01438  
NCBI BioProject Name unidentified eubacterium SCB49
NCBI BioProject ID 19389
NCBI BioProject Accession
PRJNA19389  
NCBI Locus Tag
SCB  
NCBI BioSample Accession
SAMN02981237  
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2011-09-21
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Environmental
Marine Microbial Initiative (MMI)
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute Kalmar University (Sweden)
Funding Agency Gordon and Betty Moore Foundation Marine Microbiology Initiative (USA)
Project Description
In the first call we were allowed to provide quite a number of bacteria which in the sense of fairness to other scientists perhaps should exclude us from having more isolates sequenced. However since we possess a large collection of isolates we feel that we should suggest isolates that correspond to the intention of the call i.e. physiologically diverse prokaryotes that we feel may carry novel information. Some of our isolates indeed show very low similarity to already sequenced 16S rRNA genes and may thus represent novel lineages.

In an effort to understand the nitrogen cycle of the Baltic Sea we have investigated the occurrence of nitrogen fixing heterotrophic bacteria and have a few isolates that we believe represent biogeochemically active bacterioplankton. Carbohydrate scavenging and high levels of respiration appear to be the key to their functioning in the role of nitrogen fixers.  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
Project Information Entrez
Information
Taxonomy
Database
  
Genome Publications
  
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Ulvibacter sp. SCB49
Analysis Projects Ulvibacter sp. SCB49
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
34  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0001280
Organism Name
Ulvibacter sp. SCB49  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Ulvibacter  
Genus Synonyms
  
Species
Ulvibacter sp. SCB49  
Subspecies
  
Species Synonyms
  
Strain
SCB49  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 50743
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
unidentified eubacterium SCB49  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Marine
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?