PROJECT NAME
GOLD Project ID
Gp0000351  
Project Name
Candidatus Koribacter versatilis Ellin345  
Other Names
  
Legacy ER Project ID
10306  
Legacy GOLD ID
Gi01488, Gc00380  
NCBI BioProject Name Candidatus Koribacter versatilis Ellin345
NCBI BioProject ID 15771
NCBI BioProject Accession
PRJNA15771  
NCBI Locus Tag
Acid345  
NCBI BioSample Accession
SAMN02598354  
PI Cheryl Kuske
Added By Nikos Kyrpides on 2007-11-27 00:00:00.0
Last Modified By Jon Bertsch on 2014-04-08 00:00:00.0
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Bioremediation
Biotechnological
Environmental
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Strain for comparative analysis  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Wikipedia
Database
  
Genome Publications Applied and environmental microbiology 75(7):2046-56 Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.
Other Publications
  
Isolation Publications
  
NCBI SRA ID
  
PROJECT COMPOSITION
Studies Acidobacteria Uncultured
Analysis Projects Candidatus Koribacter versatilis Ellin345
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
3 kb, 8 kb, 40 kb  
Number Of Reads
60626  
Read Size
  
Vector
  
GC Percent
58  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000351
Organism Name
Candidatus Koribacter versatilis Ellin345  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACIDOBACTERIA  
Genus
Candidatus Koribacter  
Genus Synonyms
Acidobacterium  
Species
Candidatus Koribacter versatilis  
Subspecies
  
Species Synonyms
  
Strain
Ellin345  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 204669
NCBI Kingdom
  
NCBI Phylum
Acidobacteria  
NCBI Class
Acidobacteriia  
NCBI Order
Acidobacteriales  
NCBI Family
Acidobacteriaceae  
NCBI Genus
Candidatus Koribacter  
NCBI Species
Candidatus Koribacter versatilis  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Agricultural land  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
0.5 μm  
Cell Length
1.0 μm  
Color
  
Gram Staining
Gram-  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Soil
Terrestrial
Metabolisms
  
Phenotypes Acidophile
Non-Pathogen
Energy Sources Chemoorganotroph
Heterotroph
Oligotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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