PROJECT INFORMATION
GOLD Project ID
Gp0000156  
Project Name
Candidatus Vesicomyosocius okutanii HA  
Other Names
  
Legacy ER Project ID
10130  
Legacy GOLD ID
Gc00555  
NCBI BioProject Name Candidatus Vesicomyosocius okutanii HA
NCBI BioProject ID 18267
NCBI BioProject Accession PRJDA18267
NCBI Locus Tag
COSY  
NCBI BioSample Accession
PI Maruyama T
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Evolution
Sequencing Center Japan Agency for Marine-Earth Science and Technology (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
A sulfur-oxidizing microbe which provides nutritional support to the bivalve Calyptogena okutanii  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information Entrez
Taxonomy
Database
  
Genome Publications Current biology : CB Reduced genome of the thioautotrophic intracellular symbiont in a deep-sea clam, Calyptogena okutanii.
Other Publications
  
PROJECT COMPOSITION
Study Candidatus Vesicomyosocius okutanii HA
Analysis Projects Candidatus Vesicomyosocius okutanii HA
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
1-2, 4-7 kb  
Number Of Reads
  
Read Size
  
Vector
pUC18  
GC Percent
32  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000156
Organism Name
Candidatus Vesicomyosocius okutanii HA  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
  
Genus Synonyms
  
Species
Candidatus Vesicomyosocius okutanii HA  
Subspecies
  
Species Synonyms
  
Strain
HA  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 412965
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
  
NCBI Family
  
NCBI Genus
  
NCBI Species
Calyptogena okutanii thioautotrophic gill symbiont  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mollusca  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
  
Symbiont Name
Calyptogena okutanii  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Host
Metabolisms Sulfur oxidizer
Phenotypes Non-Pathogen
Energy Sources Chemoautotroph

 

 

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