PROJECT INFORMATION
GOLD Project ID
Gp0000153  
Project Name
Dehalococcoides mccartyi BAV1  
Other Names
  
Legacy ER Project ID
10127  
Legacy GOLD ID
Gi00937, Gc00558  
NCBI BioProject Name Dehalococcoides sp. BAV1
NCBI BioProject ID 15770
NCBI BioProject Accession PRJNA15770
NCBI Locus Tag
DehaBAV1  
NCBI BioSample Accession SAMN02598353
PI Frank Loeffler
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Biotechnological
Bioremediation
Ecological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Degrades dichloroethenes and vinyl chloride  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Isolation
Taxonomy
Entrez
Database
  
Genome Publications PLoS genetics 5(11):e1000714 Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides.
Other Publications
  
PROJECT COMPOSITION
Study Dehalococcoides sp. Strain BAV1
Analysis Projects Dehalococcoides mccartyi BAV1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000153
Organism Name
Dehalococcoides mccartyi BAV1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLOROFLEXI  
Genus
Dehalococcoides  
Genus Synonyms
  
Species
Dehalococcoides mccartyi  
Subspecies
  
Species Synonyms
  
Strain
BAV1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 216389
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chloroflexi  
NCBI Class
Dehalococcoidia  
NCBI Order
Dehalococcoidales  
NCBI Family
Dehalococcoidaceae  
NCBI Genus
Dehalococcoides  
NCBI Species
Dehalococcoides mccartyi  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Freshwater  
Ecosystem Subtype
Groundwater  
Specific Ecosystem
Contaminated  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Disc-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
0.8 ?m   
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Fresh water
Groundwater
Metabolisms Dechlorinates Tetrachloroethene
Phenotypes
  
Energy Sources Chemolithotroph

 

 

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