PROJECT INFORMATION
GOLD Project ID
Gp0009884  
Project Name
Bradyrhizobium sp. WSM1743  
Other Names
  
Legacy ER Project ID
18963  
Legacy GOLD ID
Gi08863  
NCBI BioProject Name Bradyrhizobium sp. WSM1743
NCBI BioProject ID 162991
NCBI BioProject Accession PRJNA162991
NCBI Locus Tag
YU9  
NCBI BioSample Accession SAMN02441116
PI Nikos Kyrpides
Added By Ionna Pagani on 2011-02-10
Last Modified By Mahrukh Mujeeb on 2017-07-07
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Root Nodulating Bacteria (RNB)
GEBA-RNB
Agricultural
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Murdoch University (Australia)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Genomic Encyclopedia of Root Nodulating Bacteria.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Standards in genomic sciences High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study GEBA - Root Nodulating Bacteria
Organism Bradyrhizobium sp. WSM1743
Analysis Projects Bradyrhizobium sp. WSM1743
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Illumina
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
2x150  
Vector
  
GC Percent
63  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0009884
Organism Name
Bradyrhizobium sp. WSM1743  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Bradyrhizobium  
Genus Synonyms
  
Species
Bradyrhizobium sp. WSM1743  
Subspecies
  
Species Synonyms
  
Strain
WSM1743  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
No  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 318996
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhizobiales  
NCBI Family
Bradyrhizobiaceae  
NCBI Genus
Bradyrhizobium  
NCBI Species
Bradyrhizobium sp. WSM1743  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
5  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Mutualistic  
Symbiont Name
Indigofera sp.  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases None
Known Habitats Root nodule
Soil
Host
Plant root
Metabolisms Nitrogen fixation
Phenotypes Non-Pathogen
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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