PROJECT INFORMATION
GOLD Project ID
Gp0095647  
Project Name
Nocardiopsis alba TP-A0876  
Other Names
  
Legacy ER Project ID
74479  
Legacy GOLD ID
Gi0074479  
NCBI BioProject Name Nocardiopsis sp. TP-A0876
NCBI BioProject ID 251828
NCBI BioProject Accession PRJDB2904
NCBI Locus Tag
  
NCBI BioSample Accession SAMD00017647
PI
Added By JGI automated process on 2014-06-11
Last Modified By Supratim Mukherjee on 2018-12-06
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Industrial
Sequencing Center National Institute of Technology and Evaluation (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
To elucidate the biosynthetic pathway of nocapyrones O-Q, and to provide insight into the potential of marine-derived Nocardiopsis strains as secondary metabolite producers based on the presence of the biosynthetic gene clusters such as polyketide synthase and nonribosomal synthetase clusters.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Nocardiopsis sp. TP-A08769 genome sequencing project
Organism Nocardiopsis alba TP-A0876
Analysis Projects Nocardiopsis alba TP-A0876
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0095647
Organism Name
Nocardiopsis alba TP-A0876  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Nocardiopsis  
Genus Synonyms
  
Species
Nocardiopsis alba  
Subspecies
  
Species Synonyms
  
Strain
TP-A0876  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 53437
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Streptosporangiales  
NCBI Family
Nocardiopsaceae  
NCBI Genus
Nocardiopsis  
NCBI Species
Nocardiopsis alba  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?