PROJECT INFORMATION
GOLD Project ID
Gp0000892  
Project Name
Bacteroides ovatus ATCC 8483  
Other Names
  
Legacy ER Project ID
10783  
Legacy GOLD ID
Gi01711  
NCBI BioProject Name Bacteroides ovatus ATCC 8483
NCBI BioProject ID 18191
NCBI BioProject Accession PRJNA18191
NCBI Locus Tag
BACOVA  
NCBI BioSample Accession SAMN00627058
PI Human Gut Community Users
Added By Heather Creasy on 2007-11-27
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Human Gut Microbiome Initiative (HGMI)
Medical
Sequencing Center Washington University in St. Louis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Reference genome for the Human Microbiome Project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX076109
Experiment Title Bacteroides ovatus ATCC 8483
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name BOAC-454_060911_TUBE1
Library Layout SINGLE
Library Instrument 454 GS 20
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Bacteroides ovatus ATCC 8483
Analysis Projects Bacteroides ovatus ATCC 8483
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 3: Improved-High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
454 GS20
Library Method (MIGS-28)
  
Number Of Reads
71211  
Read Size
  
Vector
  
GC Percent
42  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0000892
Organism Name
Bacteroides ovatus ATCC 8483  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACTEROIDETES  
Genus
Bacteroides  
Genus Synonyms
  
Species
Bacteroides ovatus  
Subspecies
  
Species Synonyms
  
Strain
ATCC 8483  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 8483  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7973  
Exemplar Name
Bacteroides ovatus  
Taxon DOI
10.1601/tx.7973  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 411476
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacteroidetes  
NCBI Class
Bacteroidia  
NCBI Order
Bacteroidales  
NCBI Family
Bacteroidaceae  
NCBI Genus
Bacteroides  
NCBI Species
Bacteroides ovatus  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID L16484
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Human intestinal microflora
Host
Human fecal
Metabolisms
  
Phenotypes Non-Pathogen
Energy Sources
  
HMP METADATA
HMP ID
123  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
Yes  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2006-08-22  
Date Sequencing Begins
2006-10-10  
Date Draft Sequencing Completed
2007-03-07  
Cross Reference ID
  

 

 

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