PROJECT INFORMATION
GOLD Project ID
Gp0008897  
Project Name
Clostridium perfringens F262  
Other Names
  
Legacy ER Project ID
17860  
Legacy GOLD ID
Gi07664  
NCBI BioProject Name Clostridium perfringens F262
NCBI BioProject ID 51969
NCBI BioProject Accession PRJNA51969
NCBI Locus Tag
HA1  
NCBI BioSample Accession SAMN00199225
PI John F. Prescott
Added By Ionna Pagani on 2010-09-23
Last Modified By Supratim Mukherjee on 2017-10-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center University of Guelph
Collaborating Institute
  
Funding Agency
  
Project Description
Clostridium perfringens F262 genome sequencing.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PloS one 7(3):e32271 Genome sequencing and analysis of a type A Clostridium perfringens isolate from a case of bovine clostridial abomasitis.
Other Publications
  
PROJECT COMPOSITION
Study Clostridium perfringens F262
Organism Clostridium perfringens F262
Analysis Projects Clostridium perfringens F262
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
29  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0008897
Organism Name
Clostridium perfringens F262  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium perfringens  
Subspecies
  
Species Synonyms
  
Strain
F262  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 883064
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Clostridiaceae  
NCBI Genus
Clostridium  
NCBI Species
Clostridium perfringens  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Gas gangrene
Dysenteria
Enterotoxemia
Food poisoning
Enterocolitis
Known Habitats Soil
Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph

 

 

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