PROJECT INFORMATION
GOLD Project ID
Gp0087971  
Project Name
Methanobrevibacter millerae DSM 16643  
Other Names
  
Legacy ER Project ID
70837  
Legacy GOLD ID
Gi0070837  
NCBI BioProject Name Methanobrevibacter millerae DSM 16643
NCBI BioProject ID 254858
NCBI BioProject Accession PRJNA254858
NCBI Locus Tag
IE19  
NCBI BioSample Accession SAMN02910315
PI William Kelly
Added By JGI automated process on 2014-02-20
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study The Hungate 1000. A catalogue of reference genomes from the rumen microbiome.
Organism Methanobrevibacter millerae DSM 16643
Analysis Projects Methanobrevibacter millerae DSM 16643
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500
Illumina HiSeq 2000
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0087971
Organism Name
Methanobrevibacter millerae DSM 16643  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
EURYARCHAEOTA-METHANOBACTERIA  
Genus
Methanobrevibacter  
Genus Synonyms
  
Species
Methanobrevibacter millerae  
Subspecies
  
Species Synonyms
  
Strain
DSM 16643  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 16643  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10858  
Exemplar Name
Methanobrevibacter millerae  
Taxon DOI
10.1601/tx.10858  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 230361
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Euryarchaeota  
NCBI Class
Methanobacteria  
NCBI Order
Methanobacteriales  
NCBI Family
Methanobacteriaceae  
NCBI Genus
Methanobrevibacter  
NCBI Species
Methanobrevibacter millerae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Foregut  
Specific Ecosystem
Rumen  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Coccoid  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
7.0 - 8.0  
Cell Diameter
0.5 -1.2 um  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Chains
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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