PROJECT INFORMATION
GOLD Project ID
Gp0086856  
Project Name
Mannheimia varigena USDA-ARS-USMARC-1388  
Other Names
  
Legacy ER Project ID
69897  
Legacy GOLD ID
Gi0069897, Gc0069897  
NCBI BioProject Name Mannheimia varigena USDA-ARS-USMARC-1388
NCBI BioProject ID 230708
NCBI BioProject Accession PRJNA230708
NCBI Locus Tag
X875  
NCBI BioSample Accession SAMN03081508
PI
Added By JGI automated process on 2014-02-14
Last Modified By Alejandro Rodriguez Mojica on 2018-07-26
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center U.S. Department of Agriculture, Agricultural Research Service (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Complete closed genome sequence  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Mannheimia varigena USDA-ARS-USMARC-1388
Organism Mannheimia varigena USDA-ARS-USMARC-1388
Analysis Projects Mannheimia varigena USDA-ARS-USMARC-1388
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0086856
Organism Name
Mannheimia varigena USDA-ARS-USMARC-1388  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Mannheimia  
Genus Synonyms
  
Species
Mannheimia varigena  
Subspecies
  
Species Synonyms
  
Strain
USDA-ARS-USMARC-1388  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1434215
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pasteurellales  
NCBI Family
Pasteurellaceae  
NCBI Genus
Mannheimia  
NCBI Species
Mannheimia varigena  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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