PROJECT INFORMATION
GOLD Project ID
Gp0086706  
Project Name
Candidatus Magnetobacterium casensis MYR-1  
Other Names
  
Legacy ER Project ID
69747  
Legacy GOLD ID
Gi0069747  
NCBI BioProject Name Candidatus Magnetobacterium casensis strain:MYR-1
NCBI BioProject ID 236065
NCBI BioProject Accession PRJNA236065
NCBI Locus Tag
Mcas  
NCBI BioSample Accession SAMN02726339
PI
Added By JGI automated process on 2014-02-14
Last Modified By Galina Ovchinnikova on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Chinese Academy of Sciences (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Magnetotactic bacteria (MTB) in the phylum Nitrospirae able to form hundreds of intracellular bullet-shaped magnetite magnetosomes per cell are widespread in aquatic environments and play important roles in global iron cycling. Analyses of the genome sequence of "Candidatus Magnetobacterium casensis" provide important novel insights into the physiology and magnetosome biosynthesis of MTB belonging to the poorly understood Nitrospirae phylum. The genomic information presented here may also help guide cultivation efforts and provide essential knowledge to elucidate the function and ecology for this organism.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Candidatus Magnetobacterium casensis MYR-1
Organism Candidatus Magnetobacterium casensis MYR-1
Analysis Projects Candidatus Magnetobacterium casensis MYR-1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
49  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0086706
Organism Name
Candidatus Magnetobacterium casensis MYR-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
NITROSPIRAE  
Genus
  
Genus Synonyms
  
Species
Candidatus Magnetobacterium casensis MYR-1  
Subspecies
  
Species Synonyms
  
Strain
MYR-1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1455061
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Nitrospirae  
NCBI Class
Nitrospira  
NCBI Order
Nitrospirales  
NCBI Family
Nitrospiraceae  
NCBI Genus
Candidatus Magnetobacterium  
NCBI Species
Candidatus Magnetobacterium casensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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