PROJECT NAME
GOLD Project ID
Gp0008599  
Project Name
Candidatus Nitrosoarchaeum limnia SFB1  
Other Names
  
Legacy ER Project ID
1195  
Legacy GOLD ID
Gi07672, Gi07680  
NCBI BioProject Name Candidatus Nitrosoarchaeum limnia SFB1
NCBI BioProject ID 52465
NCBI BioProject Accession PRJNA52465
NCBI Locus Tag
NLIM  
NCBI BioSample Accession
PI Stephen Quake
Added By Ionna Pagani on 2010-09-23
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Permanent Draft  
Project Relevance Biochemical
Environmental
Sequencing Center Stanford University (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PloS one 6(2):e16626 Genome of a low-salinity ammonia-oxidizing archaeon determined by single-cell and metagenomic analysis.
Other Publications
  
PROJECT COMPOSITION
Study Candidatus Nitrosoarchaeum limnia SFB1
Analysis Projects Candidatus Nitrosoarchaeum limnia SFB1 (unscreened)
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454-GS-FLX-Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
32  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0008599
Organism Name
Candidatus Nitrosoarchaeum limnia SFB1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
ARCHAEAL  
Phylogeny
THAUMARCHAEOTA  
Genus
Candidatus Nitrosoarchaeum  
Genus Synonyms
  
Species
Candidatus Nitrosoarchaeum limnia  
Subspecies
  
Species Synonyms
  
Strain
SFB1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
No  
Culture Type
  
Organism Type
Natural  
Uncultured Type
Single Cell  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 886738
NCBI Superkingdom
Archaea  
NCBI Kingdom
  
NCBI Phylum
Thaumarchaeota  
NCBI Class
  
NCBI Order
Nitrosopumilales  
NCBI Family
Nitrosopumilaceae  
NCBI Genus
Candidatus Nitrosoarchaeum  
NCBI Species
Candidatus Nitrosoarchaeum limnia  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Intertidal zone  
Specific Ecosystem
Estuary  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Sediment
Metabolisms Ammonia-oxidizer
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the AP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?