PROJECT INFORMATION
GOLD Project ID
Gp0007937  
Project Name
Salinispora pacifica DSM 45546  
Other Names
  
Legacy ER Project ID
17756  
Legacy GOLD ID
Gi07576  
NCBI BioProject Name Salinispora pacifica DSM 45546
NCBI BioProject ID 86629
NCBI BioProject Accession PRJNA86629
NCBI Locus Tag
Salpac5  
NCBI BioSample Accession SAMN02261319
PI paul r. jensen
Added By Ionna Pagani on 2010-09-02
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Comparative analysis
Biotechnological
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute University of California, San Diego, Scripps Institute of Oceanography (USA)
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Salinispora pacifica DSM 45546 Genome sequencing  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Publication
Database
  
Genome Publications
  
Other Publications
  
PROJECT COMPOSITION
Study Genome sequencing of the marine actinomycete Salinispora pacifica
Organism Salinispora pacifica DSM 45546
Analysis Projects Salinispora pacifica DSM 45546
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 3: Improved-High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
70  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007937
Organism Name
Salinispora pacifica DSM 45546  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Salinispora  
Genus Synonyms
  
Species
Salinispora pacifica  
Subspecies
  
Species Synonyms
  
Strain
DSM 45546  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
DSM 45546  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1050198
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Actinobacteria  
NCBI Order
Micromonosporales  
NCBI Family
Micromonosporaceae  
NCBI Genus
Salinispora  
NCBI Species
Salinispora pacifica  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Filament-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Marine
Sediment
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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