PROJECT INFORMATION
GOLD Project ID
Gp0007897  
Project Name
Lactobacillus reuteri lpuph  
Other Names
  
Legacy ER Project ID
17531  
Legacy GOLD ID
Gi07305  
NCBI BioProject Name Lactobacillus reuteri lpuph
NCBI BioProject ID 50437
NCBI BioProject Accession PRJNA50437
NCBI Locus Tag
ECQ  
NCBI BioSample Accession SAMN02471904
PI
Added By Ionna Pagani on 2010-07-19
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of Nebraska (USA)
Collaborating Institute University of Nebraska (USA)
Funding Agency
  
Project Description
Lactobacillus reuteri lpuph genome sequencing  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PLoS genetics 7(2):e1001314 The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri.

Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Lactobacillus reuteri lpuph
Organism Lactobacillus reuteri lpuph
Analysis Projects Lactobacillus reuteri lpuph
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454 GS FLX Titanium
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
38  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007897
Organism Name
Lactobacillus reuteri lpuph  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lactobacillus  
Genus Synonyms
  
Species
Lactobacillus reuteri  
Subspecies
  
Species Synonyms
  
Strain
lpuph  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 863368
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lactobacillus  
NCBI Species
Lactobacillus reuteri  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes Probiotic
Energy Sources Heterotroph

 

 

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