PROJECT INFORMATION
GOLD Project ID
Gp0007882  
Project Name
Shigella flexneri J1713  
Other Names
  
Legacy ER Project ID
17041  
Legacy GOLD ID
Gi06660  
NCBI BioProject Name Shigella flexneri J1713
NCBI BioProject ID 48259
NCBI BioProject Accession PRJNA48259
NCBI Locus Tag
SFJ1713  
NCBI BioSample Accession SAMN00017129
PI
Added By Nikos Kyrpides on 2010-05-07
Last Modified By JGI automated process on 2014-10-31
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Pathogen
Medical
Sequencing Center University of Maryland School of Medicine (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Shigella flexneri J1713 genome sequencing project  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX023669
Experiment Title 454 sequencing of Shigella flexineri J1713
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 4LP100005355
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
PROJECT COMPOSITION
Study Comparative sequence analysis of Shigella species
Organism Shigella flexneri J1713
Analysis Projects Shigella flexneri J1713
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
51  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0007882
Organism Name
Shigella flexneri J1713  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Shigella  
Genus Synonyms
  
Species
Shigella flexneri  
Subspecies
  
Species Synonyms
  
Strain
J1713  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 754092
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Shigella  
NCBI Species
Shigella flexneri  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Diseases Dysenteria
Food poisoning
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph

 

 

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