PROJECT INFORMATION
GOLD Project ID
Gp0068420  
Project Name
Lactobacillus crispatus EM-LC1  
Other Names
  
Legacy ER Project ID
60021  
Legacy GOLD ID
Gi0060021  
NCBI BioProject Name Lactobacillus crispatus EM-LC1
NCBI BioProject ID 200566
NCBI BioProject Accession PRJNA200566
NCBI Locus Tag
LC367  
NCBI BioSample Accession SAMN02471465
PI
Added By JGI automated process on 2013-12-04
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center University College Cork (Ireland)
Collaborating Institute
  
Funding Agency
  
Project Description
Lb. crispatus EM367WC was isolated from a faecal sample obtained from an elderly subject. This strain exhibited antimicrobial activity in the cell free supernatant. The genome sequence of this strain will provide a clearer genomic platform for investigation of Lb. crispatus antimicrobial activity and will allow improved knowledge of its potential probiotic traits.  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Lactobacillus crispatus EM-LC1
Organism Lactobacillus crispatus EM-LC1
Analysis Projects Lactobacillus crispatus EM-LC1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
37  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0068420
Organism Name
Lactobacillus crispatus EM-LC1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Lactobacillus  
Genus Synonyms
  
Species
Lactobacillus crispatus  
Subspecies
  
Species Synonyms
  
Strain
EM-LC1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1328863
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Bacilli  
NCBI Order
Lactobacillales  
NCBI Family
Lactobacillaceae  
NCBI Genus
Lactobacillus  
NCBI Species
Lactobacillus crispatus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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