PROJECT INFORMATION
GOLD Project ID
Gp0068327  
Project Name
Selenomonas sputigena ATCC 35185  
Other Names
  
Legacy ER Project ID
59928  
Legacy GOLD ID
Gi0059928  
NCBI BioProject Name Selenomonas sputigena ATCC 35185 strain:HMP_JCVI_SC0180
NCBI BioProject ID 225316
NCBI BioProject Accession PRJNA225316
NCBI Locus Tag
HMPREF2383  
NCBI BioSample Accession
PI
Added By JGI automated process on 2013-12-04
Last Modified By JGI automated process on 2014-05-20
Project Comments
  
Project Status
incomplete  
Project Relevance Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
HMP reference genome  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study HMP reference genome
Organism Selenomonas sputigena ATCC 35185
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0003910
Organism Name
Selenomonas sputigena ATCC 35185  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Selenomonas  
Genus Synonyms
  
Species
Selenomonas sputigena  
Subspecies
  
Species Synonyms
  
Strain
ATCC 35185  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 35185  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.4422  
Exemplar Name
Selenomonas sputigena  
Taxon DOI
10.1601/tx.4422  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 546271
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Negativicutes  
NCBI Order
Selenomonadales  
NCBI Family
Selenomonadaceae  
NCBI Genus
Selenomonas  
NCBI Species
Selenomonas sputigena  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral  
Specific Ecosystem
Subgingival plaque  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID AF287793
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Periodontitis
Septicemia
Known Habitats Host
Human oral cavity
Human
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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