PROJECT INFORMATION
GOLD Project ID
Gp0006820  
Project Name
Collinsella sp. 1_1_44A2FAA  
Other Names
  
Legacy ER Project ID
16547  
Legacy GOLD ID
Gi06010  
NCBI BioProject Name Collinsella sp. 1_1_44A2FAA
NCBI BioProject ID 46365
NCBI BioProject Accession PRJNA46365
NCBI Locus Tag
HMPREF9462  
NCBI BioSample Accession
PI Birren, B
Added By Nikos Kyrpides on 2010-02-05
Last Modified By Nikos Kyrpides on 2010-03-08
Project Comments
  
Project Status
incomplete  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Broad Institute (USA)
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Collinsella sp. 1_1_44A2FAA
Analysis Projects
  
Number of Analysis Projects 0
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0006820
Organism Name
Collinsella sp. 1_1_44A2FAA  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Collinsella  
Genus Synonyms
  
Species
Collinsella sp. 1_1_44A2FAA  
Subspecies
  
Species Synonyms
  
Strain
1_1_44A2FAA  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 742721
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinobacteria  
NCBI Class
Coriobacteriia  
NCBI Order
Coriobacteriales  
NCBI Family
Coriobacteriaceae  
NCBI Genus
Collinsella  
NCBI Species
Collinsella sp. 1_1_44A2FAA  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Fecal  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Chains
Diseases None
Known Habitats Human intestinal microflora
Host
Gastrointestinal tract
Human fecal
Feces
Metabolisms
  
Phenotypes
  
Energy Sources
  
HMP METADATA
HMP ID
9462  
Show in DACC?
Yes  
HMP Project Status
In Progress  
BEI Status
  
NCBI Submission Status
2. project has NCBI project id  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Gastrointestinal tract  
HMP Isolation Body Sample Subsite
Intestinal tract  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2011-02-24  
Date Sequencing Begins
2011-02-24  
Date Draft Sequencing Completed
2010-03-16  
Cross Reference ID
  

 

 

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