PROJECT INFORMATION
GOLD Project ID
Gp0006620  
Project Name
Vibrio cholerae Mex1  
Other Names
  
Legacy ER Project ID
16444  
Legacy GOLD ID
Gc01466, Gi0016444  
NCBI BioProject Name Vibrio cholerae Mex1
NCBI BioProject ID 39757
NCBI BioProject Accession PRJNA39757
NCBI Locus Tag
ICEVCHMEX1  
NCBI BioSample Accession
PI
Added By Nikos Kyrpides on 2010-01-18
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Pathogen
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Vibrio cholerae Mex1 Targeted Locus (Loci)  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications PLoS genetics 5(12):e1000786 Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs.
Other Publications
  
PROJECT COMPOSITION
Study Vibrio cholerae Mex1
Organism Vibrio cholerae Mex1
Analysis Projects Vibrio cholerae Mex1
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0006620
Organism Name
Vibrio cholerae Mex1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Vibrio  
Genus Synonyms
  
Species
Vibrio cholerae  
Subspecies
  
Species Synonyms
  
Strain
Mex1  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 663913
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Vibrionales  
NCBI Family
Vibrionaceae  
NCBI Genus
Vibrio  
NCBI Species
Vibrio cholerae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Unclassified  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Facultative  
Cell Shape
Curved-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Food poisoning
Cholera
Known Habitats Host
Fresh water
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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