PROJECT INFORMATION
GOLD Project ID
Gp0000647  
Project Name
Chlamydia caviae GPIC  
Other Names
  
Legacy ER Project ID
10557  
Legacy GOLD ID
Gc00129  
NCBI BioProject Name Chlamydophila caviae GPIC
NCBI BioProject ID 228
NCBI BioProject Accession PRJNA228
NCBI Locus Tag
CCA  
NCBI BioSample Accession SAMN02603993
PI Read TD
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Supratim Mukherjee on 2018-06-20
Project Comments
  
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Swine Pathogen
Medical
Sequencing Center J. Craig Venter Institute (JCVI) (USA)
Collaborating Institute
  
Funding Agency National Institute of Allergy and Infectious Diseases (USA)
Project Description
Causes pharyngitis, bronchitis and pneumonitis  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Nucleic acids research Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae.
Other Publications
  
PROJECT COMPOSITION
Study Chlamydophila caviae GPIC
Organism Chlamydia caviae GPIC
Analysis Projects Chlamydia caviae GPIC
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
plasmid library of 1.5¿2.5 kb inserts and large insert lambda library  
Number Of Reads
19962  
Read Size
  
Vector
lambda-DASHII/EcoRI  
GC Percent
39  
Chromosome Count
1  
Plasmid Count
1  
ORGANISM NAME
GOLD Organism ID Go0000647
Organism Name
Chlamydia caviae GPIC  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CHLAMYDIAE  
Genus
Chlamydia  
Genus Synonyms
  
Species
Chlamydia caviae  
Subspecies
  
Species Synonyms
  
Strain
GPIC  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC VR-813  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.7776  
Exemplar Name
Chlamydophila caviae  
Taxon DOI
10.1601/tx.7776  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 227941
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Chlamydiae  
NCBI Class
Chlamydiia  
NCBI Order
Chlamydiales  
NCBI Family
Chlamydiaceae  
NCBI Genus
Chlamydia  
NCBI Species
Chlamydia caviae  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 302235
Genbank 16S ID D85708
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Symbiotic
Symbiotic Physical Interaction
Endosymbiotic intracellular  
Symbiotic Relationship
Parasitic  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Pneumonia
Bronchitis
Pharyngitis
Respiratory infection
Known Habitats Host
Metabolisms
  
Phenotypes Pathogen
Energy Sources
  

 

 

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