PROJECT NAME
GOLD Project ID
Gp0005409  
Project Name
Calothrix sp. PCC 6303  
Other Names
  
Legacy ER Project ID
15032  
Legacy GOLD ID
Gi04525, Gc02423  
NCBI BioProject Name Calothrix sp. PCC 6303
NCBI BioProject ID 158041
NCBI BioProject Accession PRJNA158041
NCBI Locus Tag
Cal6303  
NCBI BioSample Accession SAMN02261327
PI Cheryl Kerfeld
Added By Cheryl Kerfeld on 2009-07-21
Last Modified By Jon Bertsch on 2014-04-08
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Tree of Life
GEBA-PCC
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The CyanoGEBA Sequencing Project is part of the DOE Joint Genome Institute?s Genomic Encyclopedia of Bacteria and Archaea initiative. The CyanoGEBA project is a collaboration between the JGI and the Pasteur Culture Collection aimed at improving sequencing coverage of the cyanobacterial phylum based on phylogenetic criteria.  
Project Information Visibility Public
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications Proceedings of the National Academy of Sciences of the United States of America 110(3):1053-8 Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing.
Other Publications
  
PROJECT COMPOSITION
Study GEBA-PCC
Analysis Projects Calothrix sp. PCC 6303
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina
454
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
1  
Plasmid Count
3  
ORGANISM NAME
GOLD Organism ID Go0005409
Organism Name
Calothrix sp. PCC 6303  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIA  
Genus
Calothrix  
Genus Synonyms
  
Species
Calothrix sp. PCC 6303  
Subspecies
  
Species Synonyms
  
Strain
PCC 6303  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
PCC 6303  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1170562
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteria  
NCBI Class
  
NCBI Order
Nostocales  
NCBI Family
Rivulariaceae  
NCBI Genus
Calothrix  
NCBI Species
Calothrix parietina  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Algae  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats Aquatic
Fresh water
Metabolisms Nitrogen fixation
Phenotypes
  
Energy Sources Photoheterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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