PROJECT INFORMATION
GOLD Project ID
Gp0005259  
Project Name
Enterobacter hormaechei ATCC 49162  
Other Names
  
Legacy ER Project ID
15504  
Legacy GOLD ID
Gi04953  
NCBI BioProject Name Enterobacter hormaechei ATCC 49162
NCBI BioProject ID 53031
NCBI BioProject Accession PRJNA53031
NCBI Locus Tag
HMPREF9086  
NCBI BioSample Accession SAMN00259689
PI BCM-HGSC
Added By Nikos Kyrpides on 2009-08-22
Last Modified By JGI automated process on 2014-10-31
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Human Microbiome Project (HMP)
Medical
Sequencing Center Baylor College of Medicine
Collaborating Institute
  
Funding Agency NIH (USA)
Project Description
Reference genome for the Human Microbiome Project  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX057811
Experiment Title 454 XLR Sequencing of Enterobacter hormaechei str. ATCC 49162 HMP0187 Paired-End Library
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 4WG_HMP-R.187_1pA
Library Layout PAIRED
Library Instrument 454 GS FLX Titanium
PROJECT COMPOSITION
Study Human Microbiome Project (HMP) Reference Genomes
Organism Enterobacter hormaechei ATCC 49162
Analysis Projects Enterobacter hormaechei ATCC 49162
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 2: High-Quality Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) 454
Library Method (MIGS-28)
454 Paired-end  
Number Of Reads
307696  
Read Size
  
Vector
  
GC Percent
55  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0005259
Organism Name
Enterobacter hormaechei ATCC 49162  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Enterobacter  
Genus Synonyms
  
Species
Enterobacter hormaechei  
Subspecies
oral taxon 634  
Species Synonyms
  
Strain
ATCC 49162  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 49162  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3158  
Exemplar Name
Enterobacter hormaechei hormaechei  
Taxon DOI
10.1601/tx.29372  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 888063
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Enterobacter  
NCBI Species
Enterobacter hormaechei  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Animal  
Ecosystem Type
Respiratory system  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Host
Human oral cavity
Metabolisms
  
Phenotypes
  
Energy Sources Heterotroph
HMP METADATA
HMP ID
9086  
Show in DACC?
Yes  
HMP Project Status
Complete  
BEI Status
  
NCBI Submission Status
6. annotation (and sequence) public on NCBI site  
Isolate Suggestion Source
  
HMP Isolation Body Sample Site
Oral  
HMP Isolation Body Sample Subsite
  
HMP Finishing Goal
  
Source, Sample & Medical Relevance Comments
  
Isolate Availability Comments
  
Project Comments
  
DNA Received
Yes  
Date DNA Received
2010-08-01  
Date Sequencing Begins
2010-09-01  
Date Draft Sequencing Completed
2010-10-25  
Cross Reference ID
HOMD: tax_634  

 

 

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